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How do I execute the assembly plugin with different configurations?

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Add this to your pom,

<build>
...
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<executions>
<execution>
<id>1</id>
<phase>install</phase>
<goals>
<goal>assembly</goal>
</goals>
<configuration>
<descriptor>src/main/descriptors/bin.xml</descriptor>
<finalName>${project.build.finalName}-bin</finalName>
</configuration>
</execution>

<execution>
<id>2</id>
<phase>install</phase>
<goals>
<goal>assembly</goal>
</goals>
<configuration>
<descriptor>src/main/descriptors/src.xml</descriptor>
<finalName>${project.build.finalName}-src</finalName>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
...

</build>

and run mvn install, this will execute the assembly plugin twice with different config.

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